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Join to apply for the Sr. Bioinformatics Engineer role at Roche Continue with Google Continue with Google Join to apply for the Sr. Bioinformatics Engineer role at Roche At Roche you can show up as yourself, embraced for the unique qualities you bring. Our culture encourages personal expression, open dialogue, and genuine connections, where you are valued, accepted and respected for who you are, allowing you to thrive both personally and professionally. This is how we aim to prevent, stop and cure diseases and ensure everyone has access to healthcare today and for generations to come. Join Roche, where every voice matters. The Position The Opportunity: As a Sr. Bioinformatics Engineer at Roche, you won’t just support cutting-edge science—you’ll help bring it to life. You’ll play a critical role in enabling our customers to analyze genomic data faster and more accurately than ever before, powered by Roche’s groundbreaking Sequencing by Expansion (SBX) technology. SBX is redefining what's possible in next-generation sequencing, shrinking the time from sample to genome from days to hours. Its flexibility, scalability, and speed are set to transform both research and clinical genomics. In this role, you’ll be the vital link between our customers and this breakthrough platform—guiding data analysis pipelines, solving real-world bioinformatics challenges, and directly contributing to the advancement of genomic science. If you’re looking to join a mission-driven team at the forefront of innovation, and help bring a powerful new sequencing technology to life, we’d love to hear from you. Your responsibilities will include: Train, enable, and support customers during pre- and post-sales stages on successfully implementing data analysis pipelines and technical discussions Function as a link between customers and Roche, ensuring adequate bioinformatics and software support in response to customer inquiries Collaborate with scientific support teams to investigate Roche solution inquiries or support pipeline implementation optimizations Support customer and internal projects involving the design, development, and implementation of bioinformatics pipelines for analyzing large sequencing data sets, enabling the extraction of information Partner with Marketing, Sales, and Scientific Support teams to understand commercial needs, identify data analysis gaps, and propose innovative solutions Support sales in conducting scientific presentations, technical discussions, and customer meetings Provide customer feedback to product marketing and software development Travel 10% to 25% of the time in and outside the Boston area for customer on-site support and training. This role is expected to work onsite at our Wilmington, MA office at least 3 days per week. Who you are: PhD in a relevant subject (Bioinformatics, Computer Science, Computational Biology, or a closely related subject) with 3 years of related experience OR, Masters degree in a relevant subject (Bioinformatics, Computer Science, Computational Biology, or a closely related subject) with 8 years of related experience Preferred Qualifications: Strong interpersonal skills and an ability to work as an effective team member of a goal-oriented team Demonstrated proficiency in Python, source control tools (git), and pipeline workflow management tools like Nextflow or Snakemake Demonstrated experience with next-generation sequencing data analyses and pipeline development or implementation Demonstrated experience with implementing cloud-based computing infrastructure Understanding of Linux systems administration Demonstrated ability to plan, build, troubleshoot, and complete solutions to data problems, ideally in life sciences industry Excellent organization and outstanding attention to detail Excellent writing and verbal communication skills A basic knowledge of sequencing Knowledge of state-of-the-art sequence analysis tools and workflows, such as sequence alignment, variant calling, de novo assembly, genome visualization, transcript mapping Knowledge of relational databases, such as PostgreSQL This role is not eligible for relocation benefits The expected salary range for this position based on the primary location of Massachusetts is 122,300 - 227,100.00 USD. Actual pay will be determined based on experience, qualifications, geographic location, and other job-related factors permitted by law. A discretionary annual bonus may be available based on individual and Company performance. This position also qualifies for the benefits detailed at the link provided below. Benefits Who we are A healthier future drives us to innovate. Together, more than 100’000 employees across the globe are dedicated to advance science, ensuring everyone has access to healthcare today and for generations to come. Our efforts result in more than 26 million people treated with our medicines and over 30 billion tests conducted using our Diagnostics products. We empower each other to explore new possibilities, foster creativity, and keep our ambitions high, so we can deliver life-changing healthcare solutions that make a global impact. Let’s build a healthier future, together. Roche is an equal opportunity employer. It is our policy and practice to employ, promote, and otherwise treat any and all employees and applicants on the basis of merit, qualifications, and competence. The company's policy prohibits unlawful discrimination, including but not limited to, discrimination on the basis of Protected Veteran status, individuals with disabilities status, and consistent with all federal, state, or local laws. If you have a disability and need an accommodation in relation to the online application process, please contact us by completing this form Accommodations for Applicants. Roche is an equal opportunity employer and strictly prohibits unlawful discrimination based upon an individual's race, color, religion, gender, sexual orientation, gender identity/expression, national origin/ancestry, age, mental/physical disability, medical condition, marital status, veteran status, or any other characteristic protected by law. Seniority level Seniority level Associate Employment type Employment type Full-time Job function Job function Research, Science, and Engineering Industries Pharmaceutical Manufacturing, Biotechnology Research, and Medical Equipment Manufacturing Referrals increase your chances of interviewing at Roche by 2x Get notified about new Bioinformatics Engineer jobs in Boston, MA . Boston, MA $150,000 - $220,000 4 hours ago Bioinformatics Scientist, NGS Data Analysis Boston, MA $120,000.00 - $180,000.00 6 days ago Cambridge, MA $140,000.00 - $150,000.00 1 week ago BIOINFORMATICS ANALYST II, School of Medicine, Computational Biomedicine Boston, MA $180,000.00 - $210,000.00 2 weeks ago Computational Biologist / Bioinformatician - Single Cell Boston, MA $100,000.00 - $150,000.00 2 days ago Cambridge, MA $150,000 - $160,000 2 weeks ago Burlington, MA $94,567 - $171,160 2 days ago Cambridge, MA $93,800 - $174,200 2 weeks ago We’re unlocking community knowledge in a new way. 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